The raw.data is the simulated dataset which consists of 3,000 independent SNPs
and 1,004 individuals belonging to one of 5 populations (200 individuals
each) and 4 outlying individuals. The matrix raw.data contains the number 0, 1,
and 2 representing SNP in additive coding. The pairwise genetic distance between
populations are listed below (see Balding, 1995):
| pop1 | pop2 | pop3 | pop4 | pop5 | |
| pop1 | 0.0040 | 0.0059 | 0.0085 | 0.0101 | |
| pop2 | 0.0040 | 0.0055 | 0.0082 | 0.0099 | |
| pop3 | 0.0059 | 0.0055 | 0.0104 | 0.0119 | |
| pop4 | 0.0085 | 0.0082 | 0.0104 | 0.0139 | |
| pop5 | 0.0101 | 0.0099 | 0.0119 | 0.0139 |
data(ipcaps_example)
A matrix with 3,000 columns and 1,004 rows
Balding, D.J., and Nichols, R.A. (1995). A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96, 3-12.